Omop_mcp

Name: Omop_mcp
Author: OHNLP

by OHNLP

Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models

40 3 tools GitHub

No known CVEs

No license

Maintained

Last commit 108d ago

Works with most clients

Transport: stdio, sse

3 tools · ~284 tok

Grade A · 0.1% of 200K ctx

MCPpedia last refreshed this data 23h ago

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Omop_mcp is an MCP server that model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models. Its tool list has not been published yet over stdio and sse, requires no API key, and scores 64/100 on MCPpedia's security, maintenance and efficiency rubric.

Health

Step 1

Install in your client

Config is the same across clients — only the file and path differ.

Supported in Claude Desktopstdio, sse · Node 18+

Paste into ~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "omop_mcp": {
      "args": [
        "--directory",
        "<path-to-local-repo>",
        "run",
        "omop_mcp"
      ],
      "command": "uv"
    }
  }
}

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[![MCPpedia Score](https://mcppedia.org/api/badge/omop-mcp)](https://mcppedia.org/s/omop-mcp)

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What Omop_mcp does

Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using Large Language Models (LLMs). The vocabulary API is supported by OMOP HUB, and you can obtain an API key from omophub.com.

Test This Server

No automated test available for this server. Check the GitHub README for setup instructions.

Scored, not listed

Why this score

Five weighted categories — click any category to see the underlying evidence.

Score breakdown

64/100across 5 weighted dimensions

How we score →

0255075100

−36

Security

Maintenance

Efficiency

Documentation

Compatibility

Categoriesclick a row to see evidence

Security

OSV.dev

No known CVEs.

No package registry to scan.

Inventory

Tools (3)

Click any tool to inspect its schema.

~284 tokens total

Inventory

Resources (2)

omop_cdm_documentation

Live OMOP Common Data Model documentation

https://omophub.com

omop_concept

OMOP concept details and information

https://omophub.com/concepts/{concept_id}

Community

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Frequently Asked Questions

Is Omop_mcp safe to use?: Omop_mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.
How do I install Omop_mcp?: Omop_mcp supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.
What can Omop_mcp do?: Omop_mcp provides 3 tools: find_omop_concept, map_clinical_terminology, batch_concept_mapping. See the full tools list on the server page for descriptions and parameters.
What AI clients work with Omop_mcp?: Omop_mcp is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse transport.
Is Omop_mcp actively maintained?: Omop_mcp is less actively maintained — last commit was 108 days ago. It has 40 GitHub stars.

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Community

Discussion

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Has anyone used this with Cursor?How do you handle auth?Any alternatives?

Frequently Asked Questions

Is Omop_mcp safe to use?

Omop_mcp has no known CVEs as of the latest MCPpedia security scan. It does not require authentication, so any local process can connect — keep this in mind in shared environments.

How do I install Omop_mcp?

Omop_mcp supports copy-paste install configs on its MCPpedia page for Claude Desktop, Cursor, and Claude Code. Scroll to the Quick Install section and select your client.

What can Omop_mcp do?

Omop_mcp provides 3 tools: find_omop_concept, map_clinical_terminology, batch_concept_mapping. See the full tools list on the server page for descriptions and parameters.

What AI clients work with Omop_mcp?

Omop_mcp is compatible with claude-desktop, cursor, claude-code. It uses stdio and sse transport.

Is Omop_mcp actively maintained?

Omop_mcp is less actively maintained — last commit was 108 days ago. It has 40 GitHub stars.